Restores CLAUDE.md's canonical transaction rule ("the handler commits; helpers
flush; only quota owns its session") on the config path: sysconfig.set_value /
sysconfig.reset and state.set_sync_paused now flush instead of committing, so a
change lands in ONE transaction with the audit row the route records for it —
previously the helper's internal commit split them, and a crash between left the
mutation persisted with no audit trail.
All callers already commit (the config PATCH/DELETE + audit, the sync pause/resume
+ audit, the scheduler maintenance PATCH); the setup wizard, which relied on the
internal commit, gets an explicit db.commit() after its loop. apply_interval is
deliberately left committing — it performs a live APScheduler reschedule that must
follow the DB persist, so it owns its own unit of work (a legitimate exception,
like the download service transitions). New test locks the flush-not-commit
contract (a rollback before the caller commits discards the change). 368 pass.
peter